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In the Visual Tools section, different plots can be obtained to explore in more depth different aspects of the single-cell experiment data, such as how the expression of a given set of genes varies at different levels of a feature or to recognise a set of cells of interest within an embedding.

Violin by Partition

By selecting or uploading a set of genes of interest, a set of Violin plots can be obtained and download in .pdf format, allowing to facet the plots by differents categorical co-variables.

Multiplots

The Multiplots subsection allows you to explore how different variables change across cells in an embedding of your choice, such as the expression of a given set of genes, the partitions of a categorical variable, or the value of a continuous variable.