Differential Expression
Differential_Expression.Rmd
In this section, the differentially expressed genes between two
clusters can be obtained. The algorithm used is
scran::findMarkers() from the scran package
and the test type can be defined in the createSCEobject()
function (see the Summary section). Different significance levels can be
chosen interactively for both the logFC and the FDR. Once the clusters
have been chosen, a table will be displayed with the list of
differentially expressed genes accompanied by the logFC and the FDR
obtained for each of them. This table can be downloaded in different
formats: csv, pdf, xlsx.
